PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN21077.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 268aa    MW: 30150.8 Da    PI: 4.9211
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN21077.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.82.5e-10140183755
                 HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 + ErrRRdr+++++  L +l+P+      +K++Ka+i   Av Y+++Lq
  KHN21077.1 140 ISERRRRDRMKQKLYALWSLVPNI-----TKMDKASIIGDAVSYMHELQ 183
                 78*********************7.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.926133182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.01E-16133199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-15135196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.69E-12135185No hitNo description
SMARTSM003532.2E-12139188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-8139183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MDKMNFHQDP LVHIKDFEVH DFVEDPNLDQ FIDLIRWEHK DAIYNFNSKS INEAFIVDNS  60
FLSHPAIPFD HCNSNSVNVY HPISYTHSSF SCFDGEAKEE GGGEEDNMGD SSATTTTTTT  120
TTKSVNPKPI PKTDRSKTLI SERRRRDRMK QKLYALWSLV PNITKMDKAS IIGDAVSYMH  180
ELQAQANMLK AEMDMFQVDE KGFYVKIVCN KGEGVAASLC KSLESLTGFN VQSSNLATVS  240
DSFQLTFSLN AKGPEPEFNL PNLEVMGD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141146ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0992300.0BT099230.1 Soybean clone JCVI-FLGm-13J5 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003538186.11e-128PREDICTED: transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like
SwissprotQ0V7X46e-70FIT_ARATH; Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR
TrEMBLA0A0B2QMV70.0A0A0B2QMV7_GLYSO; Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR
STRINGGLYMA12G08640.11e-178(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36793358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.11e-62FER-like regulator of iron uptake
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]